Hidden Markov Model

in Study / Rosalind on Hidden markov model

Useful Probability Model for bioinformatics
Bioinformatics Algorithms (reference)

This posting is my note that I study the contents and write them in my style
This is the private repository where I can only review my notes
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Identify Probabilistic Motif

in Study / Rosalind on Motifs

For identifying motif from the suggested sequences
Bioinformatics Algorithms (reference)

This posting is my note that I study the contents and write them in my style
This is the private repository where I can only review my notes
Repository

Identify Deterministic Motif

in Study / Rosalind on Motifs

For identifying motif from the suggested sequences
Bioinformatics Algorithms (reference)

This posting is my note that I study the contents and write them in my style
This is the private repository where I can only review my notes
Repository

Regular Expression

in Study / Rosalind on Motifs

For searching motifs in suggested sequences

  • We should find the patterns which are represented in the suggested sequences
  • There are various methods for it
  • Regular Expression is simple for it
  • However, it is not efficient when there are lots of data
  • After defining the regular expression, we gonna find the pattern which corresponds to it
    • Ex) G[CG]A (RE) → GCA, GGA

Pagination

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